8UBD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8UBD_001 | 1/I/17:22 | No text annotation | geometric HL_2Y9H_003 HL_75660.10 | |
| HL_8UBD_003 | 1/I/113:121 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8UBD_002 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8UBD_003 | 1/I/6:8, 1/I/30:31 | Single bulged U | geometric IL_3WBM_001 IL_97561.7 | |
| IL_8UBD_008 | 1/I/14:16, 1/I/23:24 | Minor groove platform | geometric IL_1U6B_007 IL_41261.1 | |
| IL_8UBD_006 | 1/I/99:104, 1/I/129:132 | No text annotation | ||
| IL_8UBD_007 | 1/I/107:113, 1/I/121:126 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5TBW_061 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8UBD_001 | Single stack bend | ||
| IL_8UBD_002 | Isolated non-canonical cWW pair | ||
| IL_8UBD_004 | No text annotation | ||
| IL_8UBD_005 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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